3VQZ

Crystal structure of metallo-beta-lactamase, SMB-1, in a complex with mercaptoacetic acid

Structural Biology Knowledgebase: 3VQZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.167

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VQZ

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 28023.05

Macromolecule Entities
Molecule Chains Length Organism Details
Metallo-beta-lactamase A 262 Serratia marcescens EC#: 3.5.2.6 IUBMB
Fragment: UNP residues 19-280

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MCR
Query on MCR

A SULFANYLACETIC ACID
MERCAPTOACETIC ACID (Synonym)
C2 H4 O2 S
CWERGRDVMFNCDR-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.167
  • Space Group: P 31
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 67.03 α = 90.00
b = 67.03 β = 90.00
c = 46.79 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-04-02
  • Released Date: 2013-02-13
  • Deposition author(s): Wachino, J., Yamaguchi, Y., Mori, S., Arakawa, Y., Shibayama, K.

Revision History

No revisions since initial release