3VQP

HIV-1 IN core domain in complex with 2,3-dihydro-1,4-benzodioxin-5-ylmethanol

Structural Biology Knowledgebase: 3VQP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.197

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VQP

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 35340.78

Macromolecule Entities
Molecule Chains Length Organism Details
POL polyprotein A, B 158 Human immunodeficiency virus 1 Fragment: integrase core domain, UNP residues 770-927
Mutation: C56S, W131D, F139D, F185H

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CD
Query on CD

A, B CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
JSmol
DBJ
Query on DBJ

A 2,3-dihydro-1,4-benzodioxin-5-ylmethanol
C9 H10 O3
WATIARBIFSKYKC-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.197
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 60.85 α = 90.00
b = 63.18 β = 90.00
c = 82.13 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-03-29
  • Released Date: 2013-01-30
  • Deposition author(s): Wielens, J., Chalmers, D.K., Parker, M.W., Scanlon, M.J.

Revision History

No revisions since initial release