3VQC

HIV-1 IN core domain in complex with (5-METHYL-3-PHENYL-1,2-OXAZOL-4-YL)METHANOL

Structural Biology Knowledgebase: 3VQC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.219

Literature

Macromolecules
Sequence Display for 3VQC

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 35232.25

Macromolecule Entities
Molecule Chains Length Organism Details
POL polyprotein A, B 158 Human immunodeficiency virus 1 Fragment: integrase core domain, UNP residues 770-927
Mutation: C56S, W131D, F139D, F185H
Gene Name(s): pol
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MPK
Query on MPK

A (5-methyl-3-phenyl-1,2-oxazol-4-yl)methanol
C11 H11 N O2
GHGWDZCXZRWQBG-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CD
Query on CD

A, B CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.219
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 60.11 α = 90.00
b = 59.92 β = 90.00
c = 81.59 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-03-21
  • Released Date: 2013-01-30
  • Deposition author(s): Wielens, J., Chalmers, D.K., Parker, M.W., Scanlon, M.J.

Revision History

No revisions since initial release