3VQ4

Fragments bound to HIV-1 integrase

Structural Biology Knowledgebase: 3VQ4 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.208

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VQ4

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 35568.60

Macromolecule Entities
Molecule Chains Length Organism Details
POL polyprotein A, B 158 Human immunodeficiency virus 1 Fragment: Integrase CATALYTIC CORE DOMAIN, UNP residues 770-927
Mutation: C56S, W131D, F139D, F185H
Gene Name(s): pol

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0NX
Query on 0NX

A, B (5-phenyl-1,2-oxazol-3-yl)methanol
C10 H9 N O2
BPAFLGGUEBMWRN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CD
Query on CD

A, B CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.208
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 60.60 α = 90.00
b = 62.32 β = 90.00
c = 82.09 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-03-20
  • Released Date: 2013-01-30
  • Deposition author(s): Wielens, J., Chalmers, D.K., Parker, M.W., Scanlon, M.J.

Revision History

No revisions since initial release