Crystal structure of NPC-biotin-avidin complex DOI:10.2210/pdb3vhm/pdb

3VHM   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Biotin Binding Protein Structure Weight: 58253.09 Molecule: Avidin Polymer: 1 Type: protein Length: 123 Chains: A, B, C, D Fragment: UNP residues 25-147 Organism Gallus gallus Gene Name AVD UniProtKB:   Protein Feature View | Search PDB | P02701         Source Hide Polymer: 1 Scientific Name: Gallus gallus   Taxonomy   Common Name: Chicken       Related PDB Entries Hide Identifier Details 3VGW    3VHH    3VHI        Ligand Chemical Component Hide Identifier Formula Name Interactions NAG Search  Download  C8 H15 N O6 N-ACETYL-D-GLUCOSAMINE   Ligand Explorer NPK Search  Download  C20 H23 N3 O9 S 5-[(3aS,4R,6aR)-1-{[(1R)-1-(6-nitro-1,3-benzodioxol- 5-yl)ethoxy]carbonyl}-2-oxohexahydro-1H-thieno[3,4- d]imidazol-4-yl]pentanoic acid   Ligand Explorer SO4 Search  Download  O4 S SULFATE ION   Ligand Explorer     External Ligand Annotations Hide Identifier   Binding Affinity (Sequence Identity %) NPK Search  Download  N/A in BindingDB Ka: 15000 M-1 - data from BindingMOAD   N/A in PDBbind     External Domain Annotations Hide Pfam Classification: 1 Domain - data from Pfam   GO Terms: 1 Term - data from GO      Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Terai, T.,  Maki, E.,  Sugiyama, S.,  Takahashi, Y.,  Matsumura, H.,  Mori, Y.,  Nagano, T. Deposition:   2011-08-29 Release:   2011-12-28     Revision History    Hide No revisions since initial release     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   2.00 R-Value: 0.191 (obs.) R-Free: 0.230 Space Group: C 2 Unit Cell:   Length [Å] Angles [°] a = 131.02 α = 90.00  b = 73.54 β = 120.02  c = 81.18 γ = 90.00