3VEJ

Crystal structure of the Get5 carboxyl domain from S. cerevisiae

Structural Biology Knowledgebase: 3VEJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.23 Å
  • R-Value Free: 0.204
  • R-Value Work: 0.177

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VEJ

Classification: PROTEIN BINDING

Total Structure Weight: 9563.71

Macromolecule Entities
Molecule Chains Length Organism Details
Ubiquitin-like protein MDY2 A, B 41 Saccharomyces cerevisiae Fragment: carboxyl domain residues 175-212
Gene Name(s): MDY2 GET5 TMA24 YOL111C

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

B PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.23 Å
  • R-Value Free: 0.204
  • R-Value Work: 0.177
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 25.02 α = 90.00
b = 46.34 β = 96.90
c = 28.27 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-01-08
  • Released Date: 2012-01-25
  • Deposition author(s): Chartron, J.W., Vandervelde, D.G., Rao, M., Clemons Jr., W.M.

Revision History

  • 2012-03-28
    Type: Citation | Details: Citation update