3VBO

Crystal structure of formaldehyde treated empty human Enterovirus 71 particle (cryo at 100K)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.88 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.227

Literature

Macromolecules
Sequence Display for 3VBO

Classification: VIRUS

Total Structure Weight: 424320.19

Macromolecule Entities
Molecule Chains Length Organism Details
Genome Polyprotein, capsid protein VP1 A 297 Enterovirus a Mutation: C225M
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Genome Polyprotein, capsid protein VP2 B 237 Enterovirus a Gene Name(s):
Genome Polyprotein, capsid protein VP3 C 239 Enterovirus a Gene Name(s):

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.88 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.227
  • Space Group: P 42 3 2

Unit Cell:

Length (Å) Angle (°)
a = 353.10 α = 90.00
b = 353.10 β = 90.00
c = 353.10 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-01-02
  • Released Date: 2012-02-29
  • Deposition author(s): Wang, X., Peng, W., Ren, J., Hu, Z., Xu, J., Lou, Z., Li, X., Yin, W., Shen, X., Porta, C., Walter, T.S., Evans, G., Axford, D., Owen, R., Rowlands, D.J., Wang, J., Stuart, D.I., Fry, E.E., Rao, Z.

Revision History

  • 2012-03-28
    Type: Database references
  • 2012-04-18
    Type: Database references
  • 2012-05-02
    Type: Database references