D-alanine--D-alanine ligase from Yersinia pestis.
Osipiuk, J., Nocek, B., Mulligan, R., Papazisi, L., Anderson, W.F., Joachimiak, A.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
D-alanine--D-alanine ligase | 309 | Yersinia pestis CO92 | Mutation(s): 0  Gene Names: ddl, ddlB, y3624, YPO0557, YP_3627 EC: 6.3.2.4 | ||
UniProt | |||||
Find proteins for Q8ZIE7 (Yersinia pestis) Explore Q8ZIE7  Go to UniProtKB:  Q8ZIE7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q8ZIE7 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PGE Query on PGE | D [auth B] | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N | |||
PEG Query on PEG | C [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 100.637 | α = 90 |
b = 100.637 | β = 90 |
c = 110.304 | γ = 120 |
Software Name | Purpose |
---|---|
DENZO | data reduction |
SCALEPACK | data scaling |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
SBC-Collect | data collection |
HKL-3000 | data reduction |
HKL-3000 | data scaling |
MOLREP | phasing |
HKL-3000 | phasing |