3UGB

UbcH5c~Ubiquitin Conjugate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.211

Literature

Macromolecules
Sequence Display for 3UGB

Classification: LIGASE / PROTEIN BINDING

Total Structure Weight: 25451.09

Macromolecule Entities
Molecule Chains Length Organism Details
Ubiquitin-conjugating enzyme E2 D3 A 147 Homo sapiens EC#: 2.3.2.23 IUBMB
Fragment: unp residues 1-147
Mutation: C85S
Gene Name(s): UBE2D3 Gene View UBC5C UBCH5C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Polyubiquitin-C B 76 Homo sapiens Fragment: unp residues 1-76
Gene Name(s): UBC Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.211
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 42.03 α = 90.00
b = 52.51 β = 101.07
c = 53.11 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-11-02
  • Released Date: 2012-05-16
  • Deposition author(s): Page, R.C., Pruneda, J.N., Klevit, R.E., Misra, S.

Revision History

  • Version 1_0: 2012-05-16

    Type: Initial release

  • Version 1_1: 2012-11-14

    Type: Database references