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C.Esp1396I bound to its highest affinity operator site OM
DOI:10.2210/pdb3ufd/pdb   NDB ID: NA1369
3UFD
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: DNA Binding Protein/dna
    Structure Weight: 61415.83
    Molecule: Regulatory protein
    Polymer: 1 Type: protein Length: 82
    Chains: A, B, E, F
    Organism Enterobacter sp. RFL1396
    Gene Name esp1396IC
    UniProtKB:   Protein Feature View | Search PDB | Q8GGH0  
    Molecule: DNA (5'-D(*AP*TP*GP*TP*AP*GP*AP*CP*TP*AP*TP*AP*GP*TP*CP*GP*AP*CP*A)-3')
    Polymer: 2 Type: dna Length: 19
    Chains: C, G
    Details: OM 19-mer
    Molecule: DNA (5'-D(*TP*TP*GP*TP*CP*GP*AP*CP*TP*AP*TP*AP*GP*TP*CP*TP*AP*CP*A)-3')
    Polymer: 3 Type: dna Length: 19
    Chains: D, H
    Details: OM 19-mer
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Enterobacter sp. rfl1396   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    3CLC  Two C.Esp1396I dimers bound to C/R promoter 
    3FYA  C.Esp1396I R35A mutant free protein 
    3G5G  C.Esp1396I native free protein 
    3S8Q  C.Esp1396I bound to the distal operator site of the C/R promoter 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CL
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    CL Cl
    CHLORIDE ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA1369
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Ball, N.J.,  McGeehan, J.E.,  Streeter, S.D.,  Thresh, S-J.,  Kneale, G.G.

    Deposition:   2011-11-01
    Release:   2012-07-11
    Last Modified (REVDAT):   2012-12-19
     
  •   Revision History    Hide
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    2012-12-19
    Citation
    2012-09-12
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.80
    R-Value: 0.207 (obs.)
    R-Free: 0.237
    Space Group: P 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 47.49 α = 90.00 
    b = 147.10 β = 93.68 
    c = 47.78 γ = 90.00