3UBY

Crystal structure of human alklyadenine DNA glycosylase in a lower and higher-affinity complex with DNA

Structural Biology Knowledgebase: 3UBY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.219

Literature

Macromolecules
Sequence Display for 3UBY

Classification: HYDROLASE / DNA

Total Structure Weight: 56563.35


Macromolecule Entities
Molecule Chains Length Organism Details
DNA-3-methyladenine glycosylase A, B 219 Homo sapiens EC#: 3.2.2.21 IUBMB
Fragment: DELTA79AAG
Gene Name(s): MPG Gene View AAG ANPG MID1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*GP*AP*CP*AP*TP*GP*(EDC)P*TP*TP*GP*CP*CP*T)-3') C, D 13 synthetic

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
EDC
Query on EDC
C, D DNA LINKING C11 H14 N3 O7 P --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.219
  • Space Group: P 43

Unit Cell:

Length (Å) Angle (°)
a = 41.17 α = 90.00
b = 41.17 β = 90.00
c = 262.55 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-10-25
  • Released Date: 2011-12-28
  • Deposition author(s): Setser, J.W., Lingaraju, G.M., Davis, C.A., Samson, L.D., Drennan, C.L.

Revision History

  • 2012-01-25
    Type: Citation | Details: Citation update
  • 2012-01-18
    Type: Atom nomenclature | Details: update EDC hydrogen nomenclature
  • 2012-01-11
    Type: Citation | Details: Citation update