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MutM set 1 TpGo
DOI:10.2210/pdb3u6e/pdb   NDB ID: NA1333
3U6E
Primary Citation
 
 
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  •   Molecular Description Hide
    Classification: Hydrolase/dna
    Structure Weight: 40518.46
    Molecule: Formamidopyrimidine-DNA glycosylase
    Polymer: 1 Type: protein Length: 273
    Chains: A
    EC#: 3.2.2.23   
    Mutation: E3Q, Q166C,V222P
    Organism Geobacillus stearothermophilus
    Gene Name mutM
    UniProtKB:   Protein Feature View | Search PDB | P84131  
    Molecule: DNA (5'-D(*A*GP*GP*TP*AP*GP*AP*TP*CP*CP*AP*GP*AP*CP*GP*C)-3')
    Polymer: 2 Type: dna Length: 16
    Chains: B
    Molecule: DNA (5'-D(*TP*GP*CP*GP*TP*CP*TP*(8OG)P*GP*AP*(08Q)P*CP*TP*AP*CP*C)-3')
    Polymer: 3 Type: dna Length: 16
    Chains: C
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Geobacillus stearothermophilus   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    3U6C   
    3U6D   
    3U6L   
    3U6M   
    3U6O   
    3U6P   
    3U6Q   
    3U6S   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name Interactions
    ZN
    Search 
    Download      		ZN Zn
    ZINC ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    8OG
    Search      		8OG C10 H14 N5 O8 P DG dnaLinking
    08Q
    Search      		08Q C12 H20 N3 O7 P S nonPolymer
     
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  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA1333
     
 
Data in orange boxes are gathered from external resources (when available).
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  Biological Assembly 1       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Sung, R.J.,  Zhang, M.,  Qi, Y.,  Verdine, G.L.

    Deposition:   2011-10-12
    Release:   2012-04-25
    Last Modified (REVDAT):   2012-08-29
     
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    2012-08-29
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.70
    R-Value: 0.192 (obs.)
    R-Free: 0.207
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 45.19 α = 90.00 
    b = 93.54 β = 90.00 
    c = 104.65 γ = 90.00