The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains proteins of the 40S subunit, ribosome B DOI:10.2210/pdb3u5g/pdb

3U5G   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Split Entry The asymmetric unit for this structure is composed of multiple PDB entries: 3U5B   3U5C   3U5D   3U5E   3U5F   3U5G   3U5H   3U5I     Download All Files      Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Ribosome Structure Weight: 623900.06 Molecule: 40S ribosomal protein S0-A Polymer: 1 Type: protein Length: 252 Chains: A Organism Saccharomyces cerevisiae S288c Gene Names RPS0A NAB1 NAB1A YST1 YGR214W UniProtKB:   Protein Feature View | Search PDB | P32905     Molecule: 40S ribosomal protein S1-A Polymer: 2 Type: protein Length: 255 Chains: B Organism Saccharomyces cerevisiae S288c Gene Names RPS1A PLC1 RPS10A YLR441C L9753.9 UniProtKB:   Protein Feature View | Search PDB | P33442     Molecule: 40S ribosomal protein S2 Polymer: 3 Type: protein Length: 254 Chains: C Organism Saccharomyces cerevisiae S288c Gene Names RPS2 RPS4 SUP38 SUP44 YGL123W G2893 UniProtKB:   Protein Feature View | Search PDB | P25443     Molecule: 40S ribosomal protein S3 Polymer: 4 Type: protein Length: 240 Chains: D Organism Saccharomyces cerevisiae S288c Gene Names RPS3 SUF14 YNL178W N1653 UniProtKB:   Protein Feature View | Search PDB | P05750     Molecule: 40S ribosomal protein S4-A Polymer: 5 Type: protein Length: 261 Chains: E Organism Saccharomyces cerevisiae S288c Gene Names RPS4A RPS7B YJR145C J2186 UniProtKB:   Protein Feature View | Search PDB | P0CX35     Molecule: 40S ribosomal protein S5 Polymer: 6 Type: protein Length: 225 Chains: F Organism Saccharomyces cerevisiae S288c Gene Names RPS5 RPS2 YJR123W J2045 UniProtKB:   Protein Feature View | Search PDB | P26783     Molecule: 40S ribosomal protein S6-A Polymer: 7 Type: protein Length: 236 Chains: G Organism Saccharomyces cerevisiae S288c Gene Names RPS6A RPS101 RPS10B YPL090C LPG18C UniProtKB:   Protein Feature View | Search PDB | P0CX37     Molecule: 40S ribosomal protein S7-A Polymer: 8 Type: protein Length: 190 Chains: H Organism Saccharomyces cerevisiae S288c Gene Names RPS7A RPS30 YOR096W YOR3177W UniProtKB:   Protein Feature View | Search PDB | P26786     Molecule: 40S ribosomal protein S8-A Polymer: 9 Type: protein Length: 200 Chains: I Organism Saccharomyces cerevisiae S288c Gene Names RPS8A RPS14A YBL072C YBL06.05 YBL0613 UniProtKB:   Protein Feature View | Search PDB | P0CX39     Molecule: 40S ribosomal protein S9-A Polymer: 10 Type: protein Length: 197 Chains: J Organism Saccharomyces cerevisiae S288c Gene Names RPS9A RPS13A YS11A YPL081W UniProtKB:   Protein Feature View | Search PDB | O13516     Molecule: 40S ribosomal protein S10-A Polymer: 11 Type: protein Length: 105 Chains: K Organism Saccharomyces cerevisiae S288c Gene Names RPS10A YOR293W UniProtKB:   Protein Feature View | Search PDB | Q08745     Molecule: 40S ribosomal protein S11-A Polymer: 12 Type: protein Length: 156 Chains: L Organism Saccharomyces cerevisiae S288c Gene Names RPS11A RPS18A YDR025W YD9813.03 UniProtKB:   Protein Feature View | Search PDB | P0CX47     Molecule: 40S ribosomal protein S12 Polymer: 13 Type: protein Length: 143 Chains: M Organism Saccharomyces cerevisiae S288c Gene Names RPS12 YOR369C UniProtKB:   Protein Feature View | Search PDB | P48589     Molecule: 40S ribosomal protein S13 Polymer: 14 Type: protein Length: 151 Chains: N Organism Saccharomyces cerevisiae S288c Gene Names RPS13 RPS13C YDR064W D4252 YD9609.18 UniProtKB:   Protein Feature View | Search PDB | P05756     Molecule: 40S ribosomal protein S14-A Polymer: 15 Type: protein Length: 137 Chains: O Organism Saccharomyces cerevisiae S288c Gene Names RPS14A CRY1 RPL59 YCR031C YCR31C UniProtKB:   Protein Feature View | Search PDB | P06367     Molecule: 40S ribosomal protein S15 Polymer: 16 Type: protein Length: 142 Chains: P Organism Saccharomyces cerevisiae S288c Gene Names RPS15 RPS21 YOL040C UniProtKB:   Protein Feature View | Search PDB | Q01855     Molecule: 40S ribosomal protein S16-A Polymer: 17 Type: protein Length: 143 Chains: Q Organism Saccharomyces cerevisiae S288c Gene Names RPS16A RP61R YMR143W YM9375.12 UniProtKB:   Protein Feature View | Search PDB | P0CX51     Molecule: 40S ribosomal protein S17-A Polymer: 18 Type: protein Length: 136 Chains: R Organism Saccharomyces cerevisiae S288c Gene Names RPS17A RP51A YML024W UniProtKB:   Protein Feature View | Search PDB | P02407     Molecule: 40S ribosomal protein S18-A Polymer: 19 Type: protein Length: 146 Chains: S Organism Saccharomyces cerevisiae S288c Gene Names RPS18A YDR450W D9461.35 UniProtKB:   Protein Feature View | Search PDB | P0CX55     Molecule: 40S ribosomal protein S19-A Polymer: 20 Type: protein Length: 144 Chains: T Organism Saccharomyces cerevisiae S288c Gene Names RPS19A RP55A RPS16AA YOL121C UniProtKB:   Protein Feature View | Search PDB | P07280     Molecule: 40S ribosomal protein S20 Polymer: 21 Type: protein Length: 121 Chains: U Organism Saccharomyces cerevisiae S288c Gene Names RPS20 URP2 YHL015W UniProtKB:   Protein Feature View | Search PDB | P38701     Molecule: 40S ribosomal protein S21-A Polymer: 22 Type: protein Length: 87 Chains: V Organism Saccharomyces cerevisiae S288c Gene Names RPS21A RPS25 RPS25A RPS26A YKR057W UniProtKB:   Protein Feature View | Search PDB | P0C0V8     Molecule: 40S ribosomal protein S22-A Polymer: 23 Type: protein Length: 130 Chains: W Organism Saccharomyces cerevisiae S288c Gene Names RPS22A RPS24 RPS24A YJL190C J0355 UniProtKB:   Protein Feature View | Search PDB | P0C0W1     Molecule: 40S ribosomal protein S23-A Polymer: 24 Type: protein Length: 145 Chains: X Organism Saccharomyces cerevisiae S288c Gene Names RPS23A RPS28A YGR118W G6178 UniProtKB:   Protein Feature View | Search PDB | P0CX29     Molecule: 40S ribosomal protein S24-A Polymer: 25 Type: protein Length: 135 Chains: Y Organism Saccharomyces cerevisiae S288c Gene Names RPS24A RPS24EA YER074W UniProtKB:   Protein Feature View | Search PDB | P0CX31     Molecule: 40S ribosomal protein S25-A Polymer: 26 Type: protein Length: 108 Chains: Z Organism Saccharomyces cerevisiae S288c Gene Names RPS25A RPS31A YGR027C UniProtKB:   Protein Feature View | Search PDB | Q3E792     Molecule: 40S ribosomal protein S26-A Polymer: 27 Type: protein Length: 119 Chains: a Organism Saccharomyces cerevisiae S288c Gene Names RPS26A RPS26 YGL189C G1355 UniProtKB:   Protein Feature View | Search PDB | P39938     Molecule: 40S ribosomal protein S27-A Polymer: 28 Type: protein Length: 82 Chains: b Organism Saccharomyces cerevisiae S288c Gene Names RPS27A YKL156W UniProtKB:   Protein Feature View | Search PDB | P35997     Molecule: 40S ribosomal protein S28-A Polymer: 29 Type: protein Length: 67 Chains: c Organism Saccharomyces cerevisiae S288c Gene Names RPS28A RPS33 RPS33A YOR167C O3600 UniProtKB:   Protein Feature View | Search PDB | Q3E7X9     Molecule: 40S ribosomal protein S29-A Polymer: 30 Type: protein Length: 56 Chains: d Organism Saccharomyces cerevisiae S288c Gene Names RPS29A RPS36A YS29A YLR388W L8084.11 UniProtKB:   Protein Feature View | Search PDB | P41057     Molecule: 40S ribosomal protein S30-A Polymer: 31 Type: protein Length: 63 Chains: e Organism Saccharomyces cerevisiae S288c Gene Names RPS30A YLR287C-A L8003.23 YLR287BC UniProtKB:   Protein Feature View | Search PDB | P0CX33     Molecule: 40S ribosomal protein S31 Polymer: 32 Type: protein Length: 152 Chains: f Organism Saccharomyces cerevisiae S288c Gene Names RPS31 RPS37 UBI3 YLR167W L9470.14 UniProtKB:   Protein Feature View | Search PDB | P05759     Molecule: Guanine nucleotide-binding protein subunit beta-like protein (ASC1, RACK1) Polymer: 33 Type: protein Length: 319 Chains: g Organism Saccharomyces cerevisiae S288c Gene Names ASC1 CPC2 YMR116C YM9718.15C UniProtKB:   Protein Feature View | Search PDB | P38011     Molecule: Suppressor protein STM1 Polymer: 34 Type: protein Length: 273 Chains: h Organism Saccharomyces cerevisiae S288c Gene Names STM1 MPT4 STO1 YLR150W L9634.1 UniProtKB:   Protein Feature View | Search PDB | P39015         Source Hide Polymer: 1 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 2 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 3 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 4 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 5 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 6 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 7 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 8 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 9 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 10 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 11 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 12 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 13 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 14 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 15 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 16 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 17 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 18 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 19 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 20 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 21 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 22 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 23 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 24 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 25 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 26 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 27 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 28 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 29 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 30 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 31 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 32 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 33 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 34 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast       Ligand Chemical Component Hide Identifier Formula Name Interactions ZN Search  Download  Zn ZINC ION   Ligand Explorer     Modified Residues Hide Identifier Formula Parent Type UNK Search  C4 H9 N O2 lPeptideLinking     External Domain Annotations Hide Pfam Classification: 49 Domains - data from Pfam   GO Terms: 350 Terms - data from GO      Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). 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Biological Assembly            View in 3D More Images... Biological assembly 1         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Ben-Shem, A.,  Garreau de Loubresse, N.,  Melnikov, S.,  Jenner, L.,  Yusupova, G.,  Yusupov, M. Deposition:   2011-10-11 Release:   2011-12-21 Last Modified (REVDAT):   2012-01-25     Revision History    Hide Mouse over text for details 2012-01-25 Entry title 2012-01-25 Polymer description     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors Resolution[Å]:   3.00 R-Value: 0.182 (obs.) R-Free: 0.228 Space Group: P 21 Unit Cell:   Length [Å] Angles [°] a = 436.43 α = 90.00  b = 288.22 β = 98.99  c = 305.08 γ = 90.00      Molecule of the Month Hide Ribosomal Subunits Ribosome Aminoglycoside Antibiotics Transfer-Messenger RNA