3U23

Atomic resolution crystal structure of the 2nd SH3 domain from human CD2AP (CMS) in complex with a proline-rich peptide from human RIN3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.11 Å
  • R-Value Free: 0.167
  • R-Value Work: 0.151

Literature

Macromolecules
Sequence Display for 3U23

Classification: PROTEIN BINDING

Total Structure Weight: 9309.63

Macromolecule Entities
Molecule Chains Length Organism Details
CD2-associated protein A 65 Homo sapiens Fragment: unp residues 109-168
Gene Name(s): CD2AP Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ras and Rab interactor 3 B 17 Homo sapiens Fragment: unp residues 452-467
Gene Name(s): RIN3 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
NH2
Query on NH2
B NON-POLYMER H2 N --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.11 Å
  • R-Value Free: 0.167
  • R-Value Work: 0.151
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 53.13 α = 90.00
b = 32.04 β = 92.56
c = 39.18 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-09-30
  • Released Date: 2011-12-28
  • Deposition author(s): Simister, P.C., Rouka, E., Janning, M., Muniz, J.R.C., Kirsch, K.H., Knapp, S., von Delft, F., Filippakopoulos, P., Arrowsmith, C.H., Krojer, T., Edwards, A.M., Weigelt, J., Bountra, C., Feller, S.M., Structural Genomics Consortium (SGC)

Revision History

  • Version 1_0: 2011-12-28

    Type: Initial release

  • Version 1_1: 2012-12-05

    Type: Other

  • Version 1_2: 2016-03-09

    Type: Database references

  • Version 1_3: 2017-11-08

    Type: Refinement description