RCSB Protein Data Bank - RCSB PDB - 3U1G Structure Summary

This browser is either not Javascript enabled or has it turned off.
This site will not function correctly without Javascript.

Trypanosoma brucei methionyl-tRNA synthetase in complex with inhibitor Chem 1415

DOI:10.2210/pdb3u1g/pdb

3U1G

Display Files

FASTA Sequence
PDB File
PDB File (Header)
mmCIF File
mmCIF File (Header)
PDBML/XML File
PDBML/XML File (Header)

Download Files

FASTA Sequence
PDB File (Text)
PDB File (gz)
mmCIF File
mmCIF File (gz)
PDBML/XML File
PDBML/XML File (gz)
Structure Factor (Text)
Structure Factor (gz)

Share this Page

Facebook Twitter LinkedIn Email

Link this Page

Primary Citation

Related Citations in PDB Entry (REMARK 1) Hide

Molecular Description

Hide

Classification:	Ligase/ligase Inhibitor
Structure Weight:	124513.17

Molecule:

Methionyl-tRNA synthetase

Polymer:

Type:

protein

Length:

542

Chains:

A, B

EC#:

Fragment:

Residues 237-773

Mutation:

K456A, K457R, E458A

Organism

Trypanosoma brucei

Gene Name

Tb10.70.6470

UniProtKB:

| | Q38C91

Source

Hide

Polymer: 1

Scientific Name:

Trypanosoma brucei

Taxonomy

Expression System:

Escherichia coli

Related PDB Entries

Hide

Identifier	Details
3TUN	Same protein in complex with inhibitor 1356
3U1E	Same protein in complex with inhibitor 1387
3U1F	Same protein in complex with inhibitor 1392
3U1Z	Same protein in complex with inhibitor 1433
3U20	Same protein in complex with inhibitor 1444

Ligand Chemical Component

Hide

Identifier		Formula	Name	Interactions
415 Search Download	$<div style='width:300px;min-height:360px;text-align:center;'>Show Details<img src='/pdb/images/415_320.gif' width='300' alt='' /> <b>Ligand Name:</b> 1-{3-[(3-chloro-5-methoxybenzyl)amino]propyl}- 3-phenylurea <br /><br /> <b>Synonyms:</b> n/a </div>$	C₁₈ H₂₂ Cl N₃ O₂	1-{3-[(3-chloro-5-methoxybenzyl)amino]propyl}- 3-phenylurea		Ligand Explorer
DMS Search Download		C₂ H₆ O S	DIMETHYL SULFOXIDE		Ligand Explorer
GOL Search Download		C₃ H₈ O₃	GLYCEROL		Ligand Explorer
MET Search Download		C₅ H₁₁ N O₂ S	METHIONINE		Ligand Explorer
SO4 Search Download		O₄ S	SULFATE ION		Ligand Explorer

Modified Residues

Hide

Identifier		Formula	Parent	Type
CAS Search		C₅ H₁₂ As N O₂ S	CYS	lPeptideLinking

External Domain Annotations Hide
Pfam Classification: 3 Domains - data from Pfam
Structural Biology Knowledgebase Data Hide

Data in orange boxes are gathered from external resources (when available).

Reset Layout

Biological Assembly 1

View in 3D

More Images...

Biological assembly 1 assigned by authors and generated by PISA (software)

Downloadable viewers:

MyPDB Personal Annotations Hide

Deposition Summary

Hide

Authors: Koh, C.Y., Kim, J.E., Shibata, S., Fan, E., Verlinde, C.L.M.J., Hol, W.G.J.

Deposition:	2011-09-29
Release:	2012-10-03

Revision History Hide

No revisions since initial release

Experimental Details

Hide

Method: X-RAY DIFFRACTION
Exp. Data:
Structure Factors
EDS

Unit Cell:
	Length [Å]	Angles [°]
	a = 87.45	α = 90.00
	b = 105.73	β = 90.00
	c = 206.59	γ = 90.00