RCSB Protein Data Bank - RCSB PDB - 3TZV Structure Summary

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Crystal structure of an iNKT TCR in complex with CD1d-lysophosphatidylcholine

DOI:10.2210/pdb3tzv/pdb

3TZV

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Primary Citation

Related Citations in PDB Entry (REMARK 1) Hide

Molecular Description

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Classification:	Immune System
Structure Weight:	149944.44

Molecule:

Invariant Natural Killer T Cell Receptor chain A

Polymer:

Type:

protein

Length:

213

Chains:

A, G

Mutation:

T164C, C211A

Organism

Homo sapiens

Molecule:

Invariant Natural Killer T Cell Receptor chain B

Polymer:

Type:

protein

Length:

259

Chains:

B, H

Mutation:

S174C, C192A, C248S

Organism

Homo sapiens

Molecule:

Antigen-presenting glycoprotein CD1d

Polymer:

Type:

protein

Length:

276

Chains:

Mutation:

N42Q, N108Q, N163Q

Organism

Homo sapiens

Gene Name

CD1D

UniProtKB:

| | P15813

Molecule:

Beta-2-microglobulin

Polymer:

Type:

protein

Length:

Chains:

Organism

Homo sapiens

Gene Names

B2M CDABP0092 HDCMA22P

UniProtKB:

| | P61769

Source

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Polymer: 1

Scientific Name:

Homo sapiens

Taxonomy

Common Name:

Human

Expression System:

Escherichia coli

Polymer: 2

Scientific Name:

Homo sapiens

Taxonomy

Common Name:

Human

Expression System:

Escherichia coli

Polymer: 3

Scientific Name:

Homo sapiens

Taxonomy

Common Name:

Human

Expression System:

Trichoplusia ni

Polymer: 4

Scientific Name:

Homo sapiens

Taxonomy

Common Name:

Human

Expression System:

Trichoplusia ni

Polymer: 5

Scientific Name:

Synthetic construct

Taxonomy

Related PDB Entries

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Identifier	Details
3TYF	Lysophosphatidylcholine-reactive iNKT TCR
3U0P

Ligand Chemical Component

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Identifier	Formula	Name	Interactions
D12 Search Download	C₁₂ H₂₆	DODECANE		Ligand Explorer
FUC Search Download	C₆ H₁₂ O₅	ALPHA-L-FUCOSE		Ligand Explorer
GOL Search Download	C₃ H₈ O₃	GLYCEROL		Ligand Explorer
HEX Search Download	C₆ H₁₄	HEXANE		Ligand Explorer
LSC Search Download	C₂₆ H₅₃ N O₇ P	(4R,7R,18E)-4,7-dihydroxy-N,N,N-trimethyl- 10-oxo-3,5,9-trioxa-4-phosphaheptacos-18- en-1-aminium 4-oxide		Ligand Explorer
NAG Search Download	C₈ H₁₅ N O₆	N-ACETYL-D-GLUCOSAMINE		Ligand Explorer

External Domain Annotations Hide
Pfam Classification: 10 Domains - data from Pfam

GO Terms: 29 Terms - data from GO
Structural Biology Knowledgebase Data Hide