3TX9

OYE1 complexed with 2-(Hydroxymethyl)-cyclopent-2-enone

Structural Biology Knowledgebase: 3TX9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.182

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3TX9

Classification: OXIDOREDUCTASE

Total Structure Weight: 45664.88

Macromolecule Entities
Molecule Chains Length Organism Details
NADPH dehydrogenase 1 A 400 Saccharomyces pastorianus EC#: 1.6.99.1 IUBMB
Gene Name(s): OYE1

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FMN
Query on FMN

A FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE (Synonym)
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
3RN
Query on 3RN

A 2-(hydroxymethyl)cyclopent-2-en-1-one
C6 H8 O2
DQTFESRTIZHRRO-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.182
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 141.19 α = 90.00
b = 141.19 β = 90.00
c = 42.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-09-22
  • Released Date: 2011-10-05
  • Deposition author(s): Pompeu, Y.A., Stewart, J.D.

Revision History

No revisions since initial release