Selenium Derivatized RNA/DNA Hybrid in complex with RNase H Catalytic Domain D132N Mutant DOI:10.2210/pdb3twh/pdb   NDB ID: NA1296

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Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Hydrolase/rna/dna Structure Weight: 19885.15 Molecule: Ribonuclease H Polymer: 1 Type: protein Length: 138 Chains: A EC#: 3.1.26.4    Fragment: catalytic domain Mutation: D132N Organism Bacillus halodurans Gene Names rnhA BH0863 UniProtKB:   Protein Feature View | Search PDB | Q9KEI9     Molecule: RNA (5'-R(*UP*CP*GP*AP*CP*A)-3') Polymer: 2 Type: rna Length: 6 Chains: B Molecule: DNA (5'-D(*AP*TP*(SDG)P*TP*CP*(SDG))-3') Polymer: 3 Type: dna Length: 6 Chains: C     Source Hide Polymer: 1 Scientific Name: Bacillus halodurans   Taxonomy   Expression System: Escherichia coli   Polymer: 2 Scientific Name: Synthetic construct   Taxonomy     Polymer: 3 Scientific Name: Synthetic construct   Taxonomy         Related PDB Entries Hide Identifier Details 1ZBI  BACILLUS HALODURANS RNASE H CATALYTIC DOMAIN MUTANT D132N IN COMPLEX WITH 12-MER RNA/DNA HYBRID  2G8U  B. HALODURANS RNASE H CATALYTIC DOMAIN D132N MUTANT IN COMPLEX WITH MG2+ AND RNA/DNA HYBRID      Ligand Chemical Component Hide Identifier Formula Name Interactions MG Search  Download  Mg MAGNESIUM ION   Ligand Explorer PO4 Search  Download  O4 P PHOSPHATE ION   Ligand Explorer     Modified Residues Hide Identifier Formula Parent Type SDG Search  C10 H14 N5 O6 P Se DG dnaLinking     External Domain Annotations Hide Pfam Classification: 1 Domain - data from Pfam       Structural Biology Knowledgebase Data Hide   Nucleic Acid Database Hide View the NDB ID associated with this structure: NA1296     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Rob, A.,  Gerlits, O.,  Jiang, J.S.,  Gan, J.H.,  Huang, Z. Deposition:   2011-09-21 Release:   2012-10-03     Revision History    Hide No revisions since initial release     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   1.79 R-Value: 0.177 (obs.) R-Free: 0.208 Space Group: C 2 Unit Cell:   Length [Å] Angles [°] a = 80.66 α = 90.00  b = 37.82 β = 96.60  c = 61.94 γ = 90.00