3TAM

Crystal structure of HIV-1 reverse transcriptase (K103N mutant) in complex with inhibitor M06


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.51 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.193

Literature

Macromolecules
Sequence Display for 3TAM

Classification: Transferase / transferase Inhibitor

Total Structure Weight: 116988.39

Macromolecule Entities
Molecule Chains Length Organism Details
Reverse transcriptase/ribonuclease H A 563 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB 2.7.7.7 IUBMB 3.1.13.2 IUBMB 3.1.26.13 IUBMB
Fragment: unp residues 590-1147
Mutation: K103N
Details: p66 RT
Gene Name(s): gag-pol
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
p51 RT B 443 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB 2.7.7.7 IUBMB 3.1.13.2 IUBMB 3.1.26.13 IUBMB 3.4.23.16 IUBMB
Fragment: unp residues 588-1027
Mutation: K103N
Gene Name(s): gag-pol

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
M06
Query on M06

A 3-chloro-5-{[4-methyl-2-oxo-1-(2H-pyrazolo[3,4- b]pyridin-3-ylmethyl)-1,2-dihydropyridin- 3-yl]oxy}benzonitrile
C20 H14 Cl N5 O2
YMRUCOCNLHJFRC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
M06 N/A in BindingDB
N/A in BindingMoad
Ki: 3.7 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.51 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.193
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 117.91 α = 90.00
b = 153.90 β = 90.00
c = 155.69 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-08-04
  • Released Date: 2011-10-26
  • Deposition author(s): Yan, Y.

Revision History

  • Version 1_0: 2011-10-26

    Type: Initial release

  • Version 1_1: 2012-01-18

    Type: Database references