POP-OUT | CLOSE
 
5-hydroxycytosine paired with dAMP in RB69 gp43
DOI:10.2210/pdb3tae/pdb   NDB ID: NA1262
3TAE
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase/dna
    Structure Weight: 461018.67
    Molecule: DNA (5'-D(*CP*CP*(5OC)P*GP*GP*TP*AP*TP*GP*AP*CP*AP*GP*CP*CP*GP*CP*G)-3')
    Polymer: 1 Type: dna Length: 18
    Chains: E, G, I, K
    Details: Template DNA
    Molecule: DNA (5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*AP*CP*CP*A)-3')
    Polymer: 2 Type: dna Length: 15
    Chains: F, H, J, L
    Details: Primer DNA
    Molecule: DNA polymerase
    Polymer: 3 Type: protein Length: 906
    Chains: A, B, C, D
    EC#: 2.7.7.7   
    Mutation: D222A, D327A
    Organism: Enterobacteria phage RB69
    Gene Name: 43
    UniProtKB: Protein Feature View | Search PDB | Q38087  
     
  •   Structure Validation Hide

    Download full validation report    

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Enterobacteria phage rb69   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    3TAB   
    3TAF   
    3TAG   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    SO4
    Search 
    Download 
    SO4 O4 S
    SULFATE ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    5OC
    Search 
    5OC C9 H14 N3 O8 P dnaLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA1262
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Zahn, K.E.

    Deposition:   2011-08-04
    Release:   2011-11-09
    Last Modified (REVDAT):   2012-01-11
     
  •   Revision History    Hide
    Mouse over text for details
    2012-01-11
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.71
    R-Value: 0.229 (obs.)
    R-Free: 0.268
    Space Group: P 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 133.27 α = 90.00 
    b = 123.71 β = 95.97 
    c = 165.90 γ = 90.00