3TAB

5-hydroxycytosine paired with dGMP in RB69 gp43

Structural Biology Knowledgebase: 3TAB SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.281
  • R-Value Work: 0.232

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3TAB

Classification: Transferase / DNA

Total Structure Weight: 461082.67


Macromolecule Entities
Molecule Chains Length Organism Details
DNA polymerase A, B, C, D 906 Enterobacteria phage rb69 EC#: 2.7.7.7 IUBMB 3.1.11 IUBMB
Mutation: D222A, D327A
Gene Name(s): 43
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*CP*(5OC)P*GP*GP*TP*AP*TP*GP*AP*CP*AP*GP*CP*CP*GP*CP*G)-3') E, G, I, K 18 synthetic Template DNA
DNA (5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*AP*CP*CP*G)-3') F, H, J, L 15 synthetic Primer DNA

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

E, G, I, K SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
JSmol
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
5OC
Query on 5OC
E, G, I, K DNA LINKING C9 H14 N3 O8 P --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.281
  • R-Value Work: 0.232
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 132.76 α = 90.00
b = 121.93 β = 96.63
c = 168.91 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-08-03
  • Released Date: 2011-11-09
  • Deposition author(s): Zahn, K.E.

Revision History

  • 2012-01-11
    Type: Citation | Details: Citation update