3T24

Crystal structure of Pseudomonas aeruginosa OpdQ

Structural Biology Knowledgebase: 3T24 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.203

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3T24

Classification: MEMBRANE PROTEIN

Total Structure Weight: 139882.50

Macromolecule Entities
Molecule Chains Length Organism Details
porin A, B, C 401 Pseudomonas aeruginosa Fragment: unp residues 28-421
Gene Name(s): PA3038

Membrane Protein

Source: mpstruc | Group: BETA-BARREL

Subgroup Name: Outer Membrane Carboxylate Channels (Occ)

Protein Name: OccK6 (OpdQ) aromatic hydrocarbon channel


Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
C8E
Query on C8E

A, B, C (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
C16 H34 O5
FEOZZFHAVXYAMB-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, C SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.203
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 64.72 α = 77.76
b = 78.46 β = 81.50
c = 97.52 γ = 70.04

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-07-22
  • Released Date: 2012-02-08
  • Deposition author(s): van den Berg, B., Eren, E.

Revision History

No revisions since initial release