3SZQ

Structure of an S. pombe APTX/DNA/AMP/Zn complex

Structural Biology Knowledgebase: 3SZQ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.211
  • R-Value Work: 0.165

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3SZQ

Classification: HYDROLASE / DNA

Total Structure Weight: 30267.34


Macromolecule Entities
Molecule Chains Length Organism Details
Aprataxin-like protein A 206 Schizosaccharomyces pombe EC#: 3 IUBMB
Fragment: APTX HIT-ZNF catalytic domain (UNP residues 31-232)
Gene Name(s): hnt3 SPCC18.09c
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*CP*CP*CP*TP*G)-3' B 5 synthetic
5'-D(*TP*AP*TP*CP*GP*GP*AP*AP*TP*CP*AP*GP*GP*G)-3' C 14 synthetic

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AMP
Query on AMP

A ADENOSINE MONOPHOSPHATE
C10 H14 N5 O7 P
UDMBCSSLTHHNCD-KQYNXXCUSA-N
Ligand Explorer
 
JSmol
BME
Query on BME

A BETA-MERCAPTOETHANOL
C2 H6 O S
DGVVWUTYPXICAM-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.211
  • R-Value Work: 0.165
  • Space Group: I 4 3 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 157.05 α = 90.00
b = 157.05 β = 90.00
c = 157.05 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-07-19
  • Released Date: 2011-10-12
  • Deposition author(s): Tumbale, P., Krahn, J., Williams, R.S.

Revision History

  • 2011-11-23
    Type: Citation | Details: Citation update