3SY9

Crystal structure of Pseudomonas aeruginosa OccD2 (OpdC)

Structural Biology Knowledgebase: 3SY9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.216

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3SY9

Classification: membrane protein

Total Structure Weight: 196205.42

Macromolecule Entities
Molecule Chains Length Organism Details
Histidine porin OpdC A, B, C, D 430 Pseudomonas aeruginosa Mutation: L328V
Gene Name(s): opdC PA0162

Membrane Protein

Source: mpstruc | Group: BETA-BARREL

Subgroup Name: Outer Membrane Carboxylate Channels (Occ)

Protein Name: OccD2 (OpdC) basic amino acid uptake channel


Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
C8E
Query on C8E

A, B, C, D (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
C16 H34 O5
FEOZZFHAVXYAMB-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BOG
Query on BOG

A, B B-OCTYLGLUCOSIDE
C14 H28 O6
HEGSGKPQLMEBJL-RKQHYHRCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.216
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 93.35 α = 77.67
b = 102.83 β = 62.57
c = 101.70 γ = 62.95

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-07-16
  • Released Date: 2012-02-08
  • Deposition author(s): van den Berg, B., Eren, E.

Revision History

No revisions since initial release