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Crystal structure of Pseudomonas aeruginosa OccD2 (OpdC)
3SY9
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Membrane Protein
    Structure Weight: 196205.50
    Molecule: Histidine porin OpdC
    Polymer: 1 Type: protein Length: 430
    Chains: A, B, C, D
    Organism: Pseudomonas aeruginosa
    Gene Names: opdC PA0162
    UniProtKB: Protein Feature View | Search PDB | Q9I6X0  
    Membrane Protein:   Source: mpstruc
    BETA-BARREL
    Outer Membrane Carboxylate Channels (Occ)
    OccD2 (OpdC) basic amino acid uptake channel
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Pseudomonas aeruginosa   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    3SY7   
    3SYB   
    3SYS   
    3SZD   
    3SZV   
    3T0S   
    3T20   
    3T24   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    BOG
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    BOG C14 H28 O6
    B-OCTYLGLUCOSIDE
    C8E
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    C8E C16 H34 O5
    (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   van den Berg, B.,  Eren, E.

    Deposition:   2011-07-16
    Release:   2012-02-08
     
  •   Revision History    Hide
    No revisions since initial release
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.80
    R-Value: 0.218 (obs.)
    R-Free: 0.266
    Space Group: P 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 93.35 α = 77.67 
    b = 102.83 β = 62.57 
    c = 101.70 γ = 62.95