DNA binding domain of restriction endonuclease bound to DNA DOI:10.2210/pdb3ssc/pdb   NDB ID: NA1218

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Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: DNA Binding Protein/dna Structure Weight: 47292.50 Molecule: 5-methylcytosine-specific restriction enzyme B Polymer: 1 Type: protein Length: 170 Chains: A, B EC#: 3.1.21    Fragment: N-terminal DNA binding domain Organism Escherichia coli K-12 Gene Names mcrB rglB b4346 JW5871 UniProtKB:   Protein Feature View | Search PDB | P15005     Molecule: DNA (5'-D(*TP*GP*AP*GP*AP*(5CM)P*CP*GP*GP*TP*AP*GP*C)-3') Polymer: 2 Type: dna Length: 13 Chains: C Molecule: DNA (5'-D(*AP*GP*CP*TP*AP*(5CM)P*CP*GP*GP*TP*CP*TP*C)-3') Polymer: 3 Type: dna Length: 13 Chains: D     Source Hide Polymer: 1 Scientific Name: Escherichia coli   Taxonomy   Expression System: Escherichia coli   Polymer: 2 Scientific Name: Synthetic construct   Taxonomy     Polymer: 3 Scientific Name: Synthetic construct   Taxonomy         Related PDB Entries Hide Identifier Details 3SSD    3SSE        Modified Residues Hide Identifier Formula Parent Type 5CM Search  C10 H16 N3 O7 P DC dnaLinking     External Domain Annotations Hide Pfam Classification: 1 Domain - data from Pfam       Structural Biology Knowledgebase Data Hide   Nucleic Acid Database Hide View the NDB ID associated with this structure: NA1218     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Sukackaite, R.,  Grazulis, S.,  Siksnys, V. Deposition:   2011-07-08 Release:   2012-05-23 Last Modified (REVDAT):   2012-09-05     Revision History    Hide Mouse over text for details 2012-09-05 Citation     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   2.10 R-Value: 0.197 (obs.) R-Free: 0.259 Space Group: P 21 21 21 Unit Cell:   Length [Å] Angles [°] a = 35.40 α = 90.00  b = 67.46 β = 90.00  c = 140.77 γ = 90.00