3SFY

Cryptococcus neoformans protein farnesyltransferase in complex with FPT-II and ethylenediamine inhibitor 2

Structural Biology Knowledgebase: 3SFY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.178

Literature

Macromolecules
Sequence Display for 3SFY

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 99525.44

Macromolecule Entities
Molecule Chains Length Organism Details
Cryptococcus neoformans protein farnesyltransferase alpha subunit A 349 Cryptococcus neoformans Gene Name(s): CNBE3110
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Cryptococcus neoformans protein farnesyltransferase beta subunit B 520 Cryptococcus neoformans Gene Name(s): CNBF2330
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
3FY
Query on 3FY

B N-(2-{(4-bromophenyl)[(1-methyl-1H-imidazol- 5-yl)methyl]amino}ethyl)-1-methyl-N-(2-methylbenzyl)- 1H-imidazole-4-sulfonamide
C25 H29 Br N6 O2 S
FOPZJCZMMFSDOL-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FII
Query on FII

B [(3,7,11-TRIMETHYL-DODECA-2,6,10-TRIENYLOXYCARBAMOYL)- METHYL]-PHOSPHONIC ACID
FPP ANALOG (Synonym)
C17 H30 N O5 P
JAOBYUCYSAOLHS-XGGJEREUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
3FX
Query on 3FX

B (2R)-3-(cyclohexylamino)-2-hydroxypropane- 1-sulfonic acid
C9 H19 N O4 S
INEWUCPYEUEQTN-SECBINFHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.178
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 141.16 α = 90.00
b = 141.16 β = 90.00
c = 129.63 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-06-14
  • Released Date: 2011-08-03
  • Deposition author(s): Hast, M.A., Beese, L.S.

Revision History

  • 2011-10-19
    Type: Citation | Details: Citation update