3SBZ

Crystal Structure of Apo-MMACHC (1-244), a human B12 processing enzyme

Structural Biology Knowledgebase: 3SBZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.189

Literature

Macromolecules
Sequence Display for 3SBZ

Classification: Oxidoreductase

Total Structure Weight: 29313.56

Macromolecule Entities
Molecule Chains Length Organism Details
Methylmalonic aciduria and homocystinuria type C protein A 252 Homo sapiens Fragment: B12 binding domain, Residues 1-244
Gene Name(s): MMACHC Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MLI
Query on MLI

A MALONATE ION
C3 H2 O4
OFOBLEOULBTSOW-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.189
  • Space Group: P 62 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 112.45 α = 90.00
b = 112.45 β = 90.00
c = 112.14 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-06-06
  • Released Date: 2011-06-22
  • Deposition author(s): Koutmos, M., Gherasim, C., Smith, J.L., Banerjee, R.

Revision History

  • 2012-04-25
    Type: Citation | Details: Citation update
  • 2011-08-10
    Type: Citation | Details: Citation update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4