Retropepsin-Like Domain of Human DDI1
Walker, J.R., Asinas, A., Dong, A., Bountra, C., Weigelt, J., Arrowsmith, C.H., Edwards, A.M., Dhe-Paganon, S., Structural Genomics Consortium (SGC)To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Protein DDI1 homolog 1 | 148 | Homo sapiens | Mutation(s): 0  Gene Names: DDI1 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q8WTU0 (Homo sapiens) Explore Q8WTU0  Go to UniProtKB:  Q8WTU0 | |||||
GTEx:  ENSG00000170967  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q8WTU0 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PEG Query on PEG | F [auth B] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N | |||
PO4 Query on PO4 | C [auth A], G [auth B], H [auth B] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K | |||
EDO Query on EDO | D [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
UNX Query on UNX | E [auth A] | UNKNOWN ATOM OR ION X |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 80.981 | α = 90 |
b = 41.04 | β = 107.62 |
c = 88.975 | γ = 90 |
Software Name | Purpose |
---|---|
SBC-Collect | data collection |
PHASER | phasing |
REFMAC | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |