RCSB Protein Data Bank - RCSB PDB - 3RUL Structure Summary

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New strategy to analyze structures of glycopeptide-target complexes

DOI:10.2210/pdb3rul/pdb

3RUL

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Primary Citation

Related Citations in PDB Entry (REMARK 1) Hide

Molecular Description

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Classification:	Signaling Protein/antibiotic
Structure Weight:	43896.62

Molecule:

Ubiquitin

Polymer:

Type:

protein

Length:

Chains:

A, B, C, D

Organism

Homo sapiens

Gene Name

UBC

UniProtKB:

| | P0CG48

Molecule:

Dalbavancin

Polymer:

Type:

protein

Length:

Chains:

E, F, G, H

Source

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Polymer: 1

Scientific Name:

Homo sapiens

Taxonomy

Common Name:

Human

Expression System:

Escherichia coli

Polymer: 2

Scientific Name:

Synthetic construct

Taxonomy

Related PDB Entries

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Identifier	Details
3A9J	High resolution crystal structure of the mouse TAB2-NZF in complex with Lys63-linked di-ubiquitin
3RUM
3RUN

Ligand Chemical Component

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Identifier	Formula	Name	Interactions
CL Search Download	Cl	CHLORIDE ION		Ligand Explorer
M12 Search Download	C₁₂ H₂₄ O₂	10-METHYLUNDECANOIC ACID		Ligand Explorer
MAN Search Download	C₆ H₁₂ O₆	ALPHA-D-MANNOSE		Ligand Explorer
N1L Search Download	C₆ H₁₁ N O₆	2-AMINO-2-DEOXY-BETA-D-GLUCOPYRANURONIC ACID		Ligand Explorer
TLA Search Download	C₄ H₆ O₆	L(+)-TARTARIC ACID		Ligand Explorer

Modified Residues

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Identifier	Formula	Parent	Type
CCS Search	C₅ H₉ N O₄ S	CYS	lPeptideLinking
DAL Search	C₃ H₇ N O₂		dPeptideLinking
HGM Search	C₉ H₁₁ N O₃		dPeptideLinking
DTY Search	C₉ H₁₁ N O₃		dPeptideLinking
HCL Search	C₈ H₈ Cl N O₄		lPeptideLinking
GHP Search	C₈ H₉ N O₃		dPeptideLinking
OMY Search	C₉ H₁₀ Cl N O₄	TYR	lPeptideLinking
HG7 Search	C₁₃ H₂₁ N₃ O₂		lPeptideLinking