3RTN

Structure of Bace-1 (Beta-Secretase) in Complex with 3-(2-Amino-6-o-tolylquinolin-3-yl)-N-cyclohexylpropanamide

Structural Biology Knowledgebase: 3RTN SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.220

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3RTN

Classification: Hydrolase / Hydrolase Inhibitor

Total Structure Weight: 47121.23

Macromolecule Entities
Molecule Chains Length Organism Details
Beta-secretase 1 A 411 Homo sapiens EC#: 3.4.23.46 IUBMB
Fragment: UNP residues 43-453
Mutation: R-5K, R-4K
Gene Name(s): BACE1 Gene View BACE KIAA1149

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
IOD
Query on IOD

A IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
Ligand Explorer
 
JSmol
RTN
Query on RTN

A 3-[2-amino-6-(2-methylphenyl)quinolin-3-yl]- N-cyclohexylpropanamide
C25 H29 N3 O
JBOWUKRDBGMOJZ-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
RTN IC50: 74 nM (99) BindingDB

N/A in BindingMoad
IC50: 74 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.220
  • Space Group: P 61 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 103.36 α = 90.00
b = 103.36 β = 90.00
c = 170.20 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-05-03
  • Released Date: 2011-08-31
  • Deposition author(s): Sickmier, E.A.

Revision History

No revisions since initial release