Crystal structure of type 1 glutamine amidotransferase (GATase1)-like protein from Planctomyces limnophilus
Michalska, K., Li, H., Bearden, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
(GATase1)-like protein | 259 | Planctopirus limnophila DSM 3776 | Mutation(s): 0  Gene Names: Plim_2614 | ||
UniProt | |||||
Find proteins for D5SQH6 (Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 / Mu 290)) Explore D5SQH6  Go to UniProtKB:  D5SQH6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | D5SQH6 | ||||
Sequence AnnotationsExpand | |||||
|
Ligands 5 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
GOL Query on GOL | G [auth A] H [auth A] L [auth B] M [auth B] R [auth C] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
ACT Query on ACT | I [auth A], N [auth B], T [auth C], Y [auth D] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M | |||
CA Query on CA | E [auth A], J [auth B], O [auth C], U [auth D] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N | |||
CL Query on CL | K [auth B], V [auth D] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M | |||
NA Query on NA | F [auth A], P [auth C], Q [auth C] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 42.287 | α = 90 |
b = 126.827 | β = 96.6 |
c = 101.964 | γ = 90 |
Software Name | Purpose |
---|---|
SBC-Collect | data collection |
SHELX | model building |
MLPHARE | phasing |
DM | model building |
ARP/wARP | model building |
Coot | model building |
PHENIX | model building |
REFMAC | refinement |
HKL-3000 | data reduction |
HKL-3000 | data scaling |
SHELX | phasing |
DM | phasing |
PHENIX | phasing |