3RHC

Crystal structure of the holo form of glutaredoxin C5 from Arabidopsis thaliana


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.238 
  • R-Value Work: 0.189 
  • R-Value Observed: 0.191 

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Ligand Structure Quality Assessment 


This is version 1.4 of the entry. See complete history


Literature

Arabidopsis chloroplastic glutaredoxin c5 as a model to explore molecular determinants for iron-sulfur cluster binding into glutaredoxins.

Couturier, J.Stroher, E.Albetel, A.N.Roret, T.Muthuramalingam, M.Tarrago, L.Seidel, T.Tsan, P.Jacquot, J.P.Johnson, M.K.Dietz, K.J.Didierjean, C.Rouhier, N.

(2011) J Biol Chem 286: 27515-27527

  • DOI: https://doi.org/10.1074/jbc.M111.228726
  • Primary Citation of Related Structures:  
    3RHB, 3RHC

  • PubMed Abstract: 

    Unlike thioredoxins, glutaredoxins are involved in iron-sulfur cluster assembly and in reduction of specific disulfides (i.e. protein-glutathione adducts), and thus they are also important redox regulators of chloroplast metabolism. Using GFP fusion, AtGrxC5 isoform, present exclusively in Brassicaceae, was shown to be localized in chloroplasts. A comparison of the biochemical, structural, and spectroscopic properties of Arabidopsis GrxC5 (WCSYC active site) with poplar GrxS12 (WCSYS active site), a chloroplastic paralog, indicated that, contrary to the solely apomonomeric GrxS12 isoform, AtGrxC5 exists as two forms when expressed in Escherichia coli. The monomeric apoprotein possesses deglutathionylation activity mediating the recycling of plastidial methionine sulfoxide reductase B1 and peroxiredoxin IIE, whereas the dimeric holoprotein incorporates a [2Fe-2S] cluster. Site-directed mutagenesis experiments and resolution of the x-ray crystal structure of AtGrxC5 in its holoform revealed that, although not involved in its ligation, the presence of the second active site cysteine (Cys(32)) is required for cluster formation. In addition, thiol titrations, fluorescence measurements, and mass spectrometry analyses showed that, despite the presence of a dithiol active site, AtGrxC5 does not form any inter- or intramolecular disulfide bond and that its activity exclusively relies on a monothiol mechanism.


  • Organizational Affiliation

    Unité Mixte de Recherches 1136, Institut National de la Recherche Agronomique-Nancy Université, Interactions Arbres Microorganismes, Institut Fédératif de Recherche 110 Ecosystèmes Forestiers, Agroressources, Biomolécule et Alimentation, 54506 Vandoeuvre-lès-Nancy Cedex, France.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Glutaredoxin-C5, chloroplastic
A, B
113Arabidopsis thalianaMutation(s): 0 
Gene Names: GRXC5At4g28730F16A16.160
UniProt
Find proteins for Q8GWS0 (Arabidopsis thaliana)
Explore Q8GWS0 
Go to UniProtKB:  Q8GWS0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8GWS0
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.238 
  • R-Value Work: 0.189 
  • R-Value Observed: 0.191 
  • Space Group: H 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 111.747α = 90
b = 111.747β = 90
c = 58.476γ = 120
Software Package:
Software NamePurpose
Xnemodata collection
MOLREPphasing
REFMACrefinement
XDSdata reduction
SCALAdata scaling

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2011-06-01
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2011-08-17
    Changes: Database references
  • Version 1.3: 2011-12-14
    Changes: Non-polymer description
  • Version 1.4: 2024-02-21
    Changes: Data collection, Database references, Derived calculations