3RDR

Structure of the catalytic domain of XlyA

Structural Biology Knowledgebase: 3RDR SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.219

Literature

Macromolecules
Sequence Display for 3RDR

Classification: HYDROLASE

Total Structure Weight: 17208.95

Macromolecule Entities
Molecule Chains Length Organism Details
N-acetylmuramoyl-L-alanine amidase XlyA A 157 Bacillus subtilis EC#: 3.5.1.28 IUBMB
Gene Name(s): xlyA BSU12810
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.219
  • Space Group: P 63 2 2

Unit Cell:

Length (Å) Angle (°)
a = 96.70 α = 90.00
b = 96.70 β = 90.00
c = 114.30 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-04-01
  • Released Date: 2011-08-10
  • Deposition author(s): Low, L.Y., Liddington, R.C.
  • Previous versions: 3HMA

Revision History

  • 2011-12-21
    Type: Citation | Details: Citation update
  • 2011-08-17
    Type: Citation | Details: Citation update