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Quinolone(Clinafloxacin)-DNA cleavage complex of type IV topoisomerase from S. pneumoniae
DOI:10.2210/pdb3rad/pdb   NDB ID: NA1059
3RAD
Primary Citation
 
 
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  •   Molecular Description Hide
    Classification: Isomerase/dna/antibiotic
    Structure Weight: 185562.78
    Molecule: DNA topoisomerase 4 subunit A
    Polymer: 1 Type: protein Length: 496
    Chains: A, B
    EC#: 5.99.1   
    Fragment: UNP residues 1-488
    Organism Streptococcus pneumoniae
    Gene Names parC SP_0855
    UniProtKB:   Protein Feature View | Search PDB | P72525  
    Molecule: DNA topoisomerase 4 subunit B
    Polymer: 2 Type: protein Length: 268
    Chains: C, D
    EC#: 5.99.1   
    Fragment: UNP residues 404-647
    Organism Streptococcus pneumoniae
    Gene Names parE SP_0852
    UniProtKB:   Protein Feature View | Search PDB | Q59961  
    Molecule: 5'-D(*CP*AP*TP*GP*AP*AP*T)-3'
    Polymer: 3 Type: dna Length: 7
    Chains: E
    Molecule: 5'-D(P*AP*GP*TP*CP*AP*TP*TP*CP*AP*TP*G)-3'
    Polymer: 4 Type: dna Length: 11
    Chains: F
    Molecule: 5'-D(*CP*GP*TP*GP*CP*AP*T)-3'
    Polymer: 5 Type: dna Length: 7
    Chains: G
    Molecule: 5'-D(P*GP*AP*CP*TP*AP*TP*GP*CP*AP*CP*G)-3'
    Polymer: 6 Type: dna Length: 11
    Chains: H
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Streptococcus pneumoniae   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Streptococcus pneumoniae   Taxonomy   Expression System: Escherichia coli  
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 4
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 5
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 6
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    2NOV  Crystal structure of ParC55 from S. pneumoniae 
    3FOE  Clinafloxacin-stabilised cleavage complex of topo IV from S. pneumoniae 
    3FOF  Moxifloxacin-stabilised cleavage complex of topo IV from S. pneumoniae 
    3K9F  Levofloxacin-stabilised cleavage complex of topo IV from S. pneumoniae (soaked) 
    3KSA  Drug-free cleavage complex of topo IV from S. pneumoniae (cleaved form) 
    3KSB  Drug-free cleavage complex of topo IV from S. pneumoniae (resealed form) 
    3LTN  PD0305970-stabilised cleavage complex of topo IV from S. pneumoniae 
    3RAE   
    3RAF   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name Interactions
    MG
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    MAGNESIUM ION
    NFX
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    Download      		NFX C17 H17 Cl F N3 O3
    7-[(3R)-3-aminopyrrolidin-1-yl]-8-chloro- 1-cyclopropyl-6-fluoro-4-oxo-1,4-dihydroquinoline- 3-carboxylic acid
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA1059
     
 
Data in orange boxes are gathered from external resources (when available).
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  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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