3QLX

Candida glabrata dihydrofolate reductase complexed with NADPH and 6-methyl-5-[(3R)-3-(3,4,5-trimethoxyphenyl)pent-1-yn-1-yl]pyrimidine-2,4-diamine (UCP112A)

Structural Biology Knowledgebase: 3QLX SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.24 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.185

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3QLX

Classification: OXIDOREDUCTASE / OXIDOREDUCTASE INHIBITOR

Total Structure Weight: 55058.78

Macromolecule Entities
Molecule Chains Length Organism Details
Strain CBS138 chromosome J complete sequence A, B 227 Candida glabrata Gene Name(s): CAGL0J03894g
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NDP
Query on NDP

A, B NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
C21 H30 N7 O17 P3
ACFIXJIJDZMPPO-NNYOXOHSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
QLR
Query on QLR

A, B 6-methyl-5-[(3R)-3-(3,4,5-trimethoxyphenyl)pent- 1-yn-1-yl]pyrimidine-2,4-diamine
C19 H24 N4 O3
LMNOGGWYIMBHHK-LBPRGKRZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
QLR N/A in BindingDB
IC50: 27 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.24 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.185
  • Space Group: P 41
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 42.76 α = 90.00
b = 42.76 β = 90.00
c = 232.12 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-02-03
  • Released Date: 2011-07-20
  • Deposition author(s): Paulsen, J.L., Bendel, S.D., Anderson, A.C.

Revision History

  • 2013-11-20
    Type: Non-polymer description | Details: Change NAP to NDP to reflect presence of NADPH
  • 2011-09-28
    Type: Citation | Details: Citation update