POP-OUT | CLOSE
 
Candida glabrata dihydrofolate reductase complexed with NADPH and 6-methyl-5-[(3R)-3-(3,4,5-trimethoxyphenyl)pent-1-yn-1-yl]pyrimidine-2,4-diamine (UCP112A)
3QLX
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Oxidoreductase/oxidoreductase Inhibitor
    Structure Weight: 55058.70
    Molecule: Strain CBS138 chromosome J complete sequence
    Polymer: 1 Type: protein Length: 227
    Chains: A, B
    Organism: Candida glabrata
    Gene Name: CAGL0J03894g
    UniProtKB: Protein Feature View | Search PDB | Q6FPH0  
     
  •   Structure Validation Hide

    Download full validation report    

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Candida glabrata   Taxonomy   Common Name: Yeast Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    3CSE  Candida glabrata Dihydrofolate Reductase complexed with NADPH and 2,4-diamino-5-(3-(2,5-dimethoxyphenyl)prop-1-ynyl)-6-ethylpyrimidine (UCP120B) 
    3EEJ  Candida glabrata Dihydrofolate Reductase complexed with 2,4-diamino-5-[3-methyl-3-(3-methoxy-5-phenylphenyl)prop-1-ynyl]-6-methylpyrimidine(UCP111D) and NADPH 
    3EEK  Candida glabrata Dihydrofolate Reductase complexed with 2,4-diamino-5-[3-methyl-3-(3-methoxy-5-(4-methylphenyl)phenyl)prop-1-ynyl]-6-methylpyrimidine(UCP111D4M) and NADPH 
    3EEL  Candida glabrata Dihydrofolate Reductase complexed with 2,4-diamino-5-[3-methyl-3-(3-methoxy-5-(3,5-dimethylphenyl)phenyl)prop-1-ynyl]-6-methylpyrimidine(UCP11153TM) and NADPH 
    3EEM  Candida glabrata Dihydrofolate Reductase complexed with 2,4-diamino-5-[3-methyl-3-(3-methoxy-5-(2,6-dimethylphenyl)phenyl)prop-1-ynyl]-6-methylpyrimidine(UCP111D26M) and NADPH 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    NDP
    Search 
    Download 
    NDP C21 H30 N7 O17 P3
    NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
    NDP:3QLX
    QLR
    Search 
    Download 
    QLR C19 H24 N4 O3
    6-methyl-5-[(3R)-3-(3,4,5-trimethoxyphenyl)pent- 1-yn-1-yl]pyrimidine-2,4-diamine
    QLR:3QLX
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    QLR
    Search 
    Download 
    QLR
    N/Ain BindingDB
    IC50: 27 nM - data from BindingMOAD  
    N/Ain PDBbind
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Paulsen, J.L.,  Bendel, S.D.,  Anderson, A.C.

    Deposition:   2011-02-03
    Release:   2011-07-20
    Last Modified (REVDAT):   2013-11-20
     
  •   Revision History    Hide
    Mouse over text for details
    2013-11-20
    Non-polymer description
    2011-09-28
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.24
    R-Value: 0.187 (obs.)
    R-Free: 0.236
    Space Group: P 41
    Unit Cell:
      Length [Å] Angles [°]
    a = 42.76 α = 90.00 
    b = 42.76 β = 90.00 
    c = 232.12 γ = 90.00