Design of a series of novel three-armed pyrrolidine-based inhibitors for HIV-1 protease
Lindemann, I., Klee, N., Heine, A., Diederich, W.E., Klebe, G.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Protease | 99 | Human immunodeficiency virus type 1 (BRU ISOLATE) | Mutation(s): 3  EC: 3.4.23.16 | ||
UniProt | |||||
Find proteins for P03367 (Human immunodeficiency virus type 1 group M subtype B (isolate BRU/LAI)) Explore P03367  Go to UniProtKB:  P03367 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P03367 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
JHG Query on JHG | C [auth A] | 4-{(3-phenylpropyl)[(3S,4S)-4-{[4-(trifluoromethyl)benzyl]amino}pyrrolidin-3-yl]sulfamoyl}benzamide C28 H31 F3 N4 O3 S PREONNALBCMUBU-UIOOFZCWSA-N | |||
GOL Query on GOL | D [auth A], F [auth B], G [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
CL Query on CL | E [auth A], H [auth B], I [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
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a = 58.2 | α = 90 |
b = 86.14 | β = 90 |
c = 46.49 | γ = 90 |
Software Name | Purpose |
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MAR345dtb | data collection |
PHASER | phasing |
PHENIX | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |