3PXY

CDK2 in complex with inhibitor JWS648


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.211

Literature

Macromolecules
Sequence Display for 3PXY

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 35089.55

Macromolecule Entities
Molecule Chains Length Organism Details
Cell division protein kinase 2 A 306 Homo sapiens EC#: 2.7.11.22 IUBMB
Gene Name(s): CDK2 Gene View CDKN2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
JWS
Query on JWS

A 2-(4,6-diamino-1,3,5-triazin-2-yl)-4-methoxyphenol
C10 H11 N5 O2
OQGZVJIFCDXDFS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
JWS N/A in BindingDB
IC50: 5900 nM  BindingMOAD
IC50: 5900 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.211
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 52.82 α = 90.00
b = 71.74 β = 90.00
c = 72.07 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-12-10
  • Released Date: 2011-02-16
  • Deposition author(s): Han, H., Betzi, S., Alam, R., Schonbrunn, E.

Revision History

  • Version 1_0: 2011-02-16

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance