3PG8

Truncated form of 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase from Thermotoga maritima

Structural Biology Knowledgebase: 3PG8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.209
  • R-Value Work: 0.155

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3PG8

Classification: Transferase

Total Structure Weight: 60495.58

Macromolecule Entities
Molecule Chains Length Organism Details
Phospho-2-dehydro-3-deoxyheptonate aldolase A, B 272 Thermotoga maritima EC#: 2.5.1.54 IUBMB
Fragment: Catalytic domain
Gene Name(s): aroF TM_0343

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
AZI
Query on AZI

A AZIDE ION
N3
IVRMZWNICZWHMI-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CSD
Query on CSD
A, B L-PEPTIDE LINKING C3 H7 N O4 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.209
  • R-Value Work: 0.155
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 53.51 α = 90.00
b = 55.46 β = 90.00
c = 166.93 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-10-31
  • Released Date: 2011-01-26
  • Deposition author(s): Cross, P.J., Dobson, R.C.J., Patchett, M.L., Parker, E.J.

Revision History

  • 2014-11-12
    Type: Other | Details: replace CSW by CSD
  • 2012-08-22
    Type: Citation | Details: Citation update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4