3PFQ

Crystal Structure and Allosteric Activation of Protein Kinase C beta II


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.0 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.193

Literature

Macromolecules
Sequence Display for 3PFQ

Classification: TRANSFERASE

Total Structure Weight: 78011.11

Macromolecule Entities
Molecule Chains Length Organism Details
Protein kinase C beta type A 674 Rattus norvegicus EC#: 2.7.11.13 IUBMB
Fragment: PKC beta II
Mutation: C71S, C217S, ΔR622, D622S, K623G, D625N, T626A, S627E, K631R, E632F, Q636H, V638P, E639V, T643P, K645Q, L646E, F647V, M649R, L651I, N654S, A657E, Y661F, T662V, P664S
Gene Name(s): Prkcb Pkcb Prkcb1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ANP
Query on ANP

A PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
TPO
Query on TPO
A L-PEPTIDE LINKING C4 H10 N O6 P THR
SEP
Query on SEP
A L-PEPTIDE LINKING C3 H8 N O6 P SER

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.0 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.193
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 114.27 α = 90.00
b = 114.27 β = 90.00
c = 170.84 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-10-28
  • Released Date: 2011-02-02
  • Deposition author(s): Leonard, T.A., Rozycki, B., Saidi, L.F., Hummer, G., Hurley, J.H.

Revision History

  • Version 1_0: 2011-02-02

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance

  • Version 1_2: 2017-11-08

    Type: Refinement description