3P4J

Ultra-high resolution structure of d(CGCGCG)2 Z-DNA

Structural Biology Knowledgebase: 3P4J SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.55 Å
  • R-Value Free: 0.085
  • R-Value Work: 0.078

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3P4J

Classification: DNA

Total Structure Weight: 3822.78

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') A, B 6 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SPM
Query on SPM

A SPERMINE
C10 H26 N4
PFNFFQXMRSDOHW-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.55 Å
  • R-Value Free: 0.085
  • R-Value Work: 0.078
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 17.88 α = 90.00
b = 31.42 β = 90.00
c = 43.90 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2010-10-06
  • Released Date: 2011-08-24
  • Deposition author(s): Brzezinski, K., Brzuszkiewicz, A., Dauter, M., Kubicki, M., Jaskolski, M., Dauter, Z.

Revision History

  • 2014-04-16
    Type: Refinement description | Details: Correct minimum occupancy