3OTG

Crystal Structure of CalG1, Calicheamicin Glycostyltransferase, TDP bound form


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.08 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.193

Literature

Macromolecules
Sequence Display for 3OTG

Classification: TRANSFERASE

Total Structure Weight: 44314.16

Macromolecule Entities
Molecule Chains Length Organism Details
CalG1 A 412 Micromonospora echinospora Gene Name(s): calG1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TYD
Query on TYD

A THYMIDINE-5'-DIPHOSPHATE
C10 H16 N2 O11 P2
UJLXYODCHAELLY-XLPZGREQSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.08 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.193
  • Space Group: P 61 2 2

Unit Cell:

Length (Å) Angle (°)
a = 106.18 α = 90.00
b = 106.18 β = 90.00
c = 155.82 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-09-11
  • Released Date: 2010-12-15
  • Deposition author(s): Chang, A., Singh, S., Bingman, C.A., Thorson, J.S., Phillips Jr., G.N., Center for Eukaryotic Structural Genomics (CESG), Enzyme Discovery for Natural Product Biosynthesis (NatPro)

Revision History

  • Version 1_0: 2010-12-15

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance

  • Version 1_2: 2011-11-02

    Type: Database references

  • Version 1_3: 2012-08-08

    Type: Structure summary

  • Version 1_4: 2017-11-08

    Type: Refinement description