Crystal structure of the CXCR4 chemokine receptor in complex with a small molecule antagonist IT1t in I222 spacegroup DOI:10.2210/pdb3oe6/pdb

3OE6   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Signaling Protein , Hydrolase Structure Weight: 59106.38 Molecule: C-X-C chemokine receptor type 4, Lysozyme Chimera Polymer: 1 Type: protein Length: 508 Chains: A EC#: 3.2.1.17    Fragment: CXCR4 residues 2-228, LYSOZYME residues 1002-1161, CXCR4 residues 231-325 Mutation: L125W, C1054T, C1097T Organism Homo sapiens Enterobacteria phage T4 Gene Name CXCR4 UniProtKB:   Protein Feature View | Search PDB | P61073         Source Hide Polymer: 1 Scientific Name: Homo sapiens, enterobacteria phage t4   Taxonomy   Expression System: Spodoptera frugiperda       Related PDB Entries Hide Identifier Details 3ODU  same protein at 2.5 A in P21 spacegroup  3OE0  same protein in complex with a cyclic peptide CVX15  3OE8  same protein in P1 spacegroup with 3 molecules per asymmetric unit  3OE9  same protein in P1 spacegroup with 2 molecules per asymmetric unit      Ligand Chemical Component Hide Identifier Formula Name Interactions GOL Search  Download  C3 H8 O3 GLYCEROL   Ligand Explorer ITD Search  Download  C21 H34 N4 S2 (6,6-dimethyl-5,6-dihydroimidazo[2,1-b][1,3]thiazol- 3-yl)methyl N,N'-dicyclohexylimidothiocarbamate   Ligand Explorer OLC Search  Download  C21 H40 O4 (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate   Ligand Explorer     External Ligand Annotations Hide Identifier   Binding Affinity (Sequence Identity %) ITD Search  Download  IC50: 1.1 - 11 nM (88 - 96) - data from BindingDB   N/A in BindingMoad Ki: 8.2 nM - data from PDBbind       External Domain Annotations Hide Pfam Classification: 4 Domains - data from Pfam       Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Wu, B.,  Mol, C.D.,  Han, G.W.,  Katritch, V.,  Chien, E.Y.T.,  Liu, W.,  Cherezov, V.,  Stevens, R.C.,  Accelerated Technologies Center for Gene to 3D Structure,  GPCR Network Deposition:   2010-08-12 Release:   2010-10-27 Last Modified (REVDAT):   2012-05-02     Revision History    Hide Mouse over text for details 2012-05-02 Entry authorship 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   3.20 R-Value: 0.235 (obs.) R-Free: 0.306 Space Group: I 2 2 2 Unit Cell:   Length [Å] Angles [°] a = 71.12 α = 90.00  b = 78.71 β = 90.00  c = 240.59 γ = 90.00      Molecule of the Month Hide Adrenergic Receptors