Human PARP-1 zinc finger 2 (Zn2) bound to DNA
DOI:10.2210/pdb3ode/pdb   NDB ID: NA0658
Primary Citation
  •   Molecular Description Hide
    Classification: DNA Binding Protein/dna
    Structure Weight: 35284.66
    Molecule: Poly [ADP-ribose] polymerase 1
    Polymer: 1 Type: protein Length: 111
    Chains: A, B
    Fragment: PARP-1 zinc finger 2, Zn2, UNP residues 105-206
    Organism: Homo sapiens
    Gene Names: ADPRT PPOL Gene View for PARP1
    UniProtKB: Search PDB | P09874   Protein Feature View
    Molecule: 5'-D(*CP*CP*CP*AP*AP*GP*CP*G)-3'
    Polymer: 2 Type: dna Length: 8
    Chains: C, E
    Molecule: 5'-D(*CP*GP*CP*TP*TP*GP*GP*G)-3'
    Polymer: 3 Type: dna Length: 8
    Chains: D, F
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot

  •   Related Citations in PDB Entry (REMARK 1) Hide
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
  •   Related PDB Entries Hide
    Identifier Details
    3OD8   Human PARP-1 zinc finger 1 (Zn1) bound to DNA 
    3ODA   Human PARP-1 zinc finger 2 (Zn2) bound to DNA 
    3ODC   Human PARP-1 zinc finger 1 (Zn1) bound to DNA 
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    ZN Zn
  •   External Domain Annotations Hide
  •   Structural Biology Knowledgebase Data Hide
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA0658
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Pascal, J.M.,  Langelier, M.-F.

    Deposition:   2010-08-11
    Release:   2011-01-12
    Last Modified (REVDAT):   2011-04-13
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  •   Experimental Details Hide
    Exp. Data:
      Structure Factors
    Resolution[Å]:   2.95
    R-Value: 0.201 (obs.)
    R-Free: 0.244
    Space Group: P 31 2 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 62.80 α = 90.00 
    b = 62.80 β = 90.00 
    c = 196.05 γ = 120.00