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Human PARP-1 zinc finger 2 (Zn2) bound to DNA
DOI:10.2210/pdb3odc/pdb   NDB ID: NA0657
3ODC
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: DNA Binding Protein/dna
    Structure Weight: 35284.66
    Molecule: Poly [ADP-ribose] polymerase 1
    Polymer: 1 Type: protein Length: 111
    Chains: A, B
    EC#: 2.4.2.30   
    Fragment: PARP-1 zinc finger 2, Zn2, UNP residues 105-206
    Organism Homo sapiens
    Gene Names PARP1 ADPRT PPOL
    UniProtKB:   Protein Feature View | Search PDB | P09874  
    Molecule: 5'-D(*CP*CP*CP*AP*GP*AP*CP*G)-3'
    Polymer: 2 Type: dna Length: 8
    Chains: C, E
    Molecule: 5'-D(*CP*GP*TP*CP*TP*GP*GP*G)-3'
    Polymer: 3 Type: dna Length: 8
    Chains: D, F
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    3OD8  Human PARP-1 zinc finger 1 (Zn1) bound to DNA 
    3ODA  Human PARP-1 zinc finger 2 (Zn2) bound to DNA 
    3ODE  Human PARP-1 zinc finger 2 (Zn2) bound to DNA 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    ZN
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    ZN Zn
    ZINC ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA0657
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Pascal, J.M.,  Langelier, M.-F.

    Deposition:   2010-08-11
    Release:   2011-01-12
    Last Modified (REVDAT):   2011-04-13
     
  •   Revision History    Hide
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    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.80
    R-Value: 0.195 (obs.)
    R-Free: 0.240
    Space Group: P 31 2 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 63.73 α = 90.00 
    b = 63.73 β = 90.00 
    c = 192.40 γ = 120.00