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Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase
DOI:10.2210/pdb3o1u/pdb   NDB ID: NA0633
3O1U
Primary Citation
 
 
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  •   Molecular Description Hide
    Classification: Oxidoreductase
    Structure Weight: 30901.70
    Molecule: Alpha-ketoglutarate-dependent dioxygenase AlkB
    Polymer: 1 Type: protein Length: 206
    Chains: A
    EC#: 1.14.11.33   
    Fragment: N-terminus 11 amino acid truncated AlkB (UNP residues 12 to 216)
    Mutation: S129C
    Organism Escherichia coli K-12
    Gene Names alkB aidD b2212 JW2200
    UniProtKB:   Protein Feature View | Search PDB | P05050  
    Molecule: DNA (5'-D(*AP*GP*GP*TP*AP*AP*(MDV)P*AP*CP*CP*GP*T)-3')
    Polymer: 2 Type: dna Length: 12
    Chains: B
    Molecule: DNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3')
    Polymer: 3 Type: dna Length: 13
    Chains: C
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Escherichia coli   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    3O1M   
    3O1O   
    3O1P   
    3O1R   
    3O1S   
    3O1T   
    3O1V   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name Interactions
    FE
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    Download      		FE Fe
    FE (III) ION
    SCC
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    Download      		SCC C2 H6 S
    THIOETHYL GROUP
    SIN
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    Download      		SIN C4 H6 O4
    SUCCINIC ACID
    		SIN:3O1U
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    MDV
    Search      		MDV C12 H16 N5 O8 P dnaLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA0633
     
 
Data in orange boxes are gathered from external resources (when available).
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  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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