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JC polyomavirus VP1
3NXG
Primary Citation
 
 
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  •   Molecular Description Hide
    Classification: Viral Protein
    Structure Weight: 151151.31
    Molecule: Major capsid protein VP1
    Polymer: 1 Type: protein Length: 272
    Chains: A, B, C, D, E
    Fragment: UNP residues 23-290
    Organism JC polyomavirus
    UniProtKB:   Protein Feature View | Search PDB | P03089  
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Jc polyomavirus   Taxonomy   Common Name: Jcpyv Expression System: Escherichia coli  
     
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    Identifier Details
    1vpn  Homologous protein Polyoma VP1 
    3bwq  Homologous protein SV40 VP1 
    3NXD  Complex with ligand LSTc oligosaccharide 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name Interactions
    EDO
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    Download      		EDO C2 H6 O2
    1,2-ETHANEDIOL
    GOL
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    Download      		GOL C3 H8 O3
    GLYCEROL
     
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Data in orange boxes are gathered from external resources (when available).
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  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Neu, U.,  Stroeh, L.J.,  Stehle, T.

    Deposition:   2010-07-13
    Release:   2010-11-17
     
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.95
    R-Value: 0.175 (obs.)
    R-Free: 0.207
    Space Group: C 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 149.57 α = 90.00 
    b = 96.02 β = 110.44 
    c = 128.55 γ = 90.00