3NJW

First High Resolution Crystal Structure of a Lasso Peptide

PDB DOI: https://doi.org/10.2210/pdb3NJW/pdb

Classification: ANTIMICROBIAL PROTEIN
Organism(s): Streptomyces sp.
Expression System: Streptomyces sp.
Mutation(s): No

Deposited: 2010-06-18 Released: 2010-09-01
Deposition Author(s): Nar, H., Schmid, A., Puder, C., Potterat, O.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 0.86 Å
R-Value Observed: 0.094

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

High-resolution crystal structure of a lasso Peptide.

Nar, H., Schmid, A., Puder, C., Potterat, O.

(2010) ChemMedChem 5: 1689-1692

PubMed: 20665759 Search on PubMed
DOI: https://doi.org/10.1002/cmdc.201000264
Primary Citation of Related Structures:
3NJW

Organizational Affiliation

Boehringer Ingelheim Pharma GmbH & Co. KG, Birkendorfer Straße 65, Germany. herbert.nar@boehringer-ingelheim.com

Macromolecule Content

Total Structure Weight: 2.06 kDa
Atom Count: 169
Modelled Residue Count: 19
Deposited Residue Count: 19
Unique protein chains: 1

Macromolecules

Find similar proteins by: Sequence | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Bicyclic peptide BI-32169	A	19	Streptomyces sp.	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 0.86 Å
R-Value Observed: 0.094
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 19.465	α = 90
b = 21.432	β = 90
c = 29.523	γ = 90

Software Package:

Software Name	Purpose
StructureStudio	data collection
SHELXD	phasing
SHELXL-97	refinement
d*TREK	data reduction
d*TREK	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2010-09-01

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2010-09-01
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2011-08-10
Changes: Atomic model, Database references

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.