POP-OUT | CLOSE
 
RB69 DNA Polymerase Ternary Complex with dCTP Opposite dG at 1.8 angstrom resolution
DOI:10.2210/pdb3nci/pdb   NDB ID: NA0642
3NCI
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase/dna
    Structure Weight: 114736.66
    Molecule: DNA polymerase
    Polymer: 1 Type: protein Length: 903
    Chains: A
    EC#: 2.7.7.7   
    Fragment: DNA polymerase
    Mutation: D222A, D327A
    Organism: Enterobacteria phage RB69
    Gene Name: 43
    UniProtKB: Protein Feature View | Search PDB | Q38087  
    Molecule: DNA (5'-D(*TP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3')
    Polymer: 2 Type: dna Length: 18
    Chains: T
    Details: Template DNA strand
    Molecule: DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3')
    Polymer: 3 Type: dna Length: 13
    Chains: P
    Details: Primer DNA strand
     
  •   Structure Validation Hide

    Download full validation report    

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Enterobacteria phage rb69   Taxonomy   Common Name: Bacteriophage rb69 Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1IG9  Structure of the Replicating Complex of a Pol Alpha Family DNA Polymerase 
    2OZS  Crystal structure of RB69 gp43 in complex with DNA with dATP opposite dTMP 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CA
    Search 
    Download 
    CA Ca
    CALCIUM ION
    DCP
    Search 
    Download 
    DCP C9 H16 N3 O13 P3
    2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE
    DCP:3NCI
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    DOC
    Search 
    DOC C9 H14 N3 O6 P DC dnaLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA0642
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
Downloadable viewers: