RB69 DNA Polymerase (Y567A) Ternary Complex with dATP Opposite Guanidinohydantoin
DOI:10.2210/pdb3nae/pdb   NDB ID: NA0583
3NAE
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase/dna
    Structure Weight: 114714.76
    Molecule: DNA polymerase
    Polymer: 1 Type: protein Length: 903
    Chains: A
    EC#: 2.7.7.7   
    Mutation: D222A, D327A, Y567A
    Organism: Enterobacteria phage RB69
    Gene Name: 43
    UniProtKB: Search PDB | Q38087   Protein Feature View
    Molecule: DNA (5'-D(*TP*CP*AP*(G35)P*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3')
    Polymer: 2 Type: dna Length: 18
    Chains: T
    Details: Template DNA strand
    Molecule: DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3')
    Polymer: 3 Type: dna Length: 13
    Chains: P
    Details: Primer DNA strand
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Enterobacteria phage rb69   Taxonomy   Common Name: Bacteriophage rb69 Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1IG9   Structure of the Replicating Complex of a Pol Alpha Family DNA Polymerase 
    2OZS   Crystal structure of RB69 gp43 in complex with DNA with dATP opposite dTMP 
    3L8B   Crystal structure of a replicative DNA polymerase bound to the oxidized guanine lesion guanidinohydantoin 
    3LZI   RB69 DNA Polymerase (Y567A) ternary complex with dATP Opposite 7,8-dihydro-8-oxoguanine 
    3LZJ   RB69 DNA Polymerase (Y567A) ternary complex with dCTP Opposite 7,8-Dihydro-8-oxoguanine 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CA
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    CA Ca
    CALCIUM ION
    DTP
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    DTP C10 H16 N5 O12 P3
    2'-DEOXYADENOSINE 5'-TRIPHOSPHATE
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    G35
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    G35 C9 H16 N5 O8 P dnaLinking
    DOC
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    DOC C9 H14 N3 O6 P DC dnaLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA0583
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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