3N40

Crystal structure of the immature envelope glycoprotein complex of Chikungunya virus.

Structural Biology Knowledgebase: 3N40 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.17 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.208

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3N40

Classification: VIRAL PROTEIN

Total Structure Weight: 89372.61

Macromolecule Entities
Molecule Chains Length Organism Details
P62 envelope glycoprotein P 401 Chikungunya virus Fragment: polyprotein fragment residues 266-666
Mutation: R64E
Gene Name(s):
E1 envelope glycoprotein F 393 Chikungunya virus Fragment: polyprotein fragment residues 810-1200
Gene Name(s):

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NDG
Query on NDG

F 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
C8 H15 N O6
OVRNDRQMDRJTHS-PVFLNQBWSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

F, P N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

F, P ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.17 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.208
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 58.74 α = 90.00
b = 90.01 β = 90.00
c = 179.03 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-05-21
  • Released Date: 2010-12-01
  • Deposition author(s): Voss, J., Vaney, M.C., Duquerroy, S., Rey, F.A.

Revision History

  • 2012-04-11
    Type: Secondary structure | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4